Alpha-GENIE

Run mode Example variant

Gene symbol

Variant ID

Chromosome

1-based position

REF ALT

Expected direction

Null depth i

Sequence length i

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AlphaGenome from Avsec et al. 2026, Nature (https://doi.org/10.1038/s41586-025-10014-0)

PTCHD1 ASD 27bp duplication from Torrico et al. 2015, Eur J Hum Genet (https://doi.org/10.1038/ejhg.2015.37)

RBFOX1 Chimp CCG deletion from Lee et al. 2026, bioRxiv (https://doi.org/10.64898/2026.04.21.719679)

Tissue and Cell Types

Visualization Group Contents

Variant Effect Group	Track Scope	Tracks Used in Plot	Unique Track Keys	Raw Rows Collapsed	Biosample Type Breakdown	Biosamples Included	Data Sources
Cortex / frontal cortex	brain_primary	5	5	0	tissue (5)	3 biosamples anterior cingulate cortex; dorsolateral prefrontal cortex; frontal cortex	encode (2); gtex (3)
Cerebellum	brain_primary	4	4	0	tissue (4)	2 biosamples cerebellar hemisphere; cerebellum	encode (2); gtex (2)
Hippocampus	brain_primary	1	1	0	tissue (1)	1 biosamples Ammon's horn	gtex (1)
Basal ganglia	brain_primary	3	3	0	tissue (3)	3 biosamples caudate nucleus; nucleus accumbens; putamen	gtex (3)
Whole brain	brain_primary	1	1	0	tissue (1)	1 biosamples brain	encode (1)
Other brain	brain_primary	10	10	1	tissue (10)	9 biosamples C1 segment of cervical spinal cord; amygdala; diencephalon; hypothalamus; occipital lobe; parietal lobe; spinal cord; substantia nigra; temporal lobe	encode (6); gtex (4)
Non-brain tissue / other	nonbrain_control	152	152	11	tissue (152)	105 biosamples Peyer's patch; Right ventricle myocardium inferior; Right ventricle myocardium superior; adipose tissue; adrenal gland; amnion; anterior lingual gland; aorta; ascending aorta; body of pancreas; breast epithelium; camera-type eye; cardiac septum; chorion; chorionic villus; colonic mucosa; coronary artery; cortex of kidney; ectocervix; endocervix; endocrine pancreas; esophagus; esophagus mucosa; esophagus muscularis mucosa; esophagus squamous epithelium; fallopian tube; fibroblast derived cell line; forelimb muscle; gastrocnemius medialis; gastroesophageal sphincter; heart; heart left ventricle; heart right ventricle; hindlimb muscle; kidney; large intestine; left cardiac atrium; left colon; left kidney; left lobe of liver; left lung; left renal cortex interstitium; left renal pelvis; left ventricle myocardium; left ventricle myocardium inferior; left ventricle myocardium superior; liver; lower leg skin; lower lobe of left lung; lower lobe of right lung; lung; lymphoblast; mesenteric fat pad; metanephros; mole; mucosa of descending colon; mucosa of gallbladder; muscle of arm; muscle of back; muscle of leg; muscle of trunk; omental fat pad; outer medulla of kidney; ovary; pancreas; pituitary gland; placenta; placental basal plate; posterior vena cava; prostate gland; psoas muscle; renal cortex interstitium; renal pelvis; right atrium auricular region; right cardiac atrium; right lobe of liver; right lung; right renal cortex interstitium; right renal pelvis; sciatic nerve; sigmoid colon; skeletal muscle tissue; skin of body; small intestine; spleen; stomach; subcutaneous adipose tissue; suprapubic skin; testis; thoracic aorta; thymus; thyroid gland; tibial artery; tibial nerve; tongue; transverse colon; trophoblast; umbilical cord; upper lobe of left lung; upper lobe of right lung; ureter; urinary bladder; uterus; vagina; venous blood	encode (111); gtex (41)
Developmental brain / neural progenitor	brain_primary	3	3	0	in_vitro_differentiated_cells (2); primary_cell (1)	3 biosamples neural progenitor cell; neuronal stem cell; neurosphere	encode (3)
Neural / glial cells	brain_primary	6	6	0	in_vitro_differentiated_cells (4); primary_cell (2)	6 biosamples Purkinje cell; astrocyte; glutamatergic neuron; motor neuron; neural cell; neural crest cell	encode (6)
Primary non-brain cell	nonbrain_control	97	97	5	primary_cell (97)	82 biosamples B cell; CD14-positive monocyte; CD4-positive, CD25-positive, alpha-beta regulatory T cell; CD4-positive, alpha-beta T cell; CD4-positive, alpha-beta memory T cell; CD8-positive, alpha-beta T cell; CD8-positive, alpha-beta memory T cell; IgD-negative memory B cell; T-cell; T-helper 17 cell; airway epithelial cell; aortic smooth muscle cell; articular chondrocyte of knee joint; bladder microvascular endothelial cell; bronchial epithelial cell; bronchial smooth muscle cell; bronchus fibroblast of lung; cardiac atrium fibroblast; cardiac ventricle fibroblast; common myeloid progenitor, CD34-positive; dermis blood vessel endothelial cell; dermis lymphatic vessel endothelial cell; dermis microvascular lymphatic vessel endothelial cell; endothelial cell of coronary artery; endothelial cell of umbilical vein; epithelial cell of alveolus of lung; epithelial cell of proximal tubule; epithelial cell of umbilical artery; fibroblast of dermis; fibroblast of lung; fibroblast of skin of abdomen; fibroblast of skin of back; fibroblast of skin of scalp; fibroblast of the aortic adventitia; fibroblast of villous mesenchyme; foreskin fibroblast; foreskin keratinocyte; foreskin melanocyte; glomerular endothelial cell; hair follicle dermal papilla cell; hair follicular keratinocyte; immature natural killer cell; keratinocyte; kidney epithelial cell; luminal epithelial cell of mammary gland; lung microvascular endothelial cell; mammary epithelial cell; mammary microvascular endothelial cell; mammary stem cell; melanocyte of skin; mesangial cell; mesenchymal stem cell of Wharton's jelly; mesenchymal stem cell of adipose; mesenchymal stem cell of the bone marrow; mononuclear cell; myoepithelial cell of mammary gland; myometrial cell; naive B cell; naive thymus-derived CD4-positive, alpha-beta T cell; naive thymus-derived CD8-positive, alpha-beta T cell; nasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa; natural killer cell; osteoblast; pericardium fibroblast; peripheral blood mononuclear cell; placental epithelial cell; placental pericyte; pulmonary artery endothelial cell; regular cardiac myocyte; renal cortical epithelial cell; skeletal muscle myoblast; skeletal muscle satellite cell; smooth muscle cell of bladder; smooth muscle cell of the coronary artery; smooth muscle cell of the pulmonary artery; smooth muscle cell of the umbilical artery; smooth muscle cell of trachea; subcutaneous preadipocyte; thoracic aorta endothelial cell; tracheal epithelial cell; uterine smooth muscle cell; vein endothelial cell	encode (97)
Non-brain cell line	nonbrain_control	66	66	8	cell_line (66)	52 biosamples A172; A375; A549; A673; AG04450; BE2C; BJ; BLaER1; Caco-2; Caki2; Calu3; Daoy; G401; GM12878; GM12891; GM12892; GM23248; GM23338; H1; H4; H7; H9; HCT116; HFFc6; HT-29; HT1080; HUES64; HeLa-S3; HepG2; IMR-90; Jurkat, Clone E6-1; K562; Karpas-422; LHCN-M2; M059J; MCF 10A; MCF-7; MG63; NCI-H460; OCI-LY7; PC-3; PC-9; PFSK-1; Panc1; RPMI7951; SJCRH30; SJSA1; SK-MEL-5; SK-N-DZ; SK-N-SH; U-87 MG; WTC11	encode (66)
In vitro non-neural	nonbrain_control	23	23	0	in_vitro_differentiated_cells (23)	18 biosamples cardiac muscle cell; chondrocyte; ectodermal cell; endodermal cell; endothelial cell; hematopoietic multipotent progenitor cell; hepatocyte; mesenchymal stem cell; mesendoderm; mesodermal cell; mesothelial cell of epicardium; myocyte; myotube; osteocyte; progenitor cell of endocrine pancreas; smooth muscle cell; trophoblast cell; type B pancreatic cell	encode (23)

Track-Level Audit

Variant Effect Group	Track Scope	Biosample Name	Biosample Type	Life Stage	GTEx Tissue	Ontology	Data Source	Track Name
Basal ganglia	brain_primary	caudate nucleus	tissue	adult	Brain_Caudate_basal_ganglia	UBERON:0001873	gtex	UBERON:0001873 gtex Brain_Caudate_basal_ganglia polyA plus RNA-seq
Basal ganglia	brain_primary	nucleus accumbens	tissue	adult	Brain_Nucleus_accumbens_basal_ganglia	UBERON:0001882	gtex	UBERON:0001882 gtex Brain_Nucleus_accumbens_basal_ganglia polyA plus RNA-seq
Basal ganglia	brain_primary	putamen	tissue	adult	Brain_Putamen_basal_ganglia	UBERON:0001874	gtex	UBERON:0001874 gtex Brain_Putamen_basal_ganglia polyA plus RNA-seq
Cerebellum	brain_primary	cerebellar hemisphere	tissue	adult	Brain_Cerebellar_Hemisphere	UBERON:0002245	gtex	UBERON:0002245 gtex Brain_Cerebellar_Hemisphere polyA plus RNA-seq
Cerebellum	brain_primary	cerebellum	tissue	adult	Brain_Cerebellum	UBERON:0002037	gtex	UBERON:0002037 gtex Brain_Cerebellum polyA plus RNA-seq
Cerebellum	brain_primary	cerebellum	tissue	embryonic		UBERON:0002037	encode	UBERON:0002037 polyA plus RNA-seq
Cerebellum	brain_primary	cerebellum	tissue	embryonic		UBERON:0002037	encode	UBERON:0002037 total RNA-seq
Cortex / frontal cortex	brain_primary	anterior cingulate cortex	tissue	adult	Brain_Anterior_cingulate_cortex_BA24	UBERON:0009835	gtex	UBERON:0009835 gtex Brain_Anterior_cingulate_cortex_BA24 polyA plus RNA-seq
Cortex / frontal cortex	brain_primary	dorsolateral prefrontal cortex	tissue	adult	Brain_Frontal_Cortex_BA9	UBERON:0009834	gtex	UBERON:0009834 gtex Brain_Frontal_Cortex_BA9 polyA plus RNA-seq
Cortex / frontal cortex	brain_primary	dorsolateral prefrontal cortex	tissue	adult		UBERON:0009834	encode	UBERON:0009834 total RNA-seq
Cortex / frontal cortex	brain_primary	frontal cortex	tissue	adult	Brain_Cortex	UBERON:0001870	gtex	UBERON:0001870 gtex Brain_Cortex polyA plus RNA-seq
Cortex / frontal cortex	brain_primary	frontal cortex	tissue	embryonic		UBERON:0001870	encode	UBERON:0001870 total RNA-seq
Developmental brain / neural progenitor	brain_primary	neural progenitor cell	in_vitro_differentiated_cells	embryonic		CL:0011020	encode	CL:0011020 total RNA-seq
Developmental brain / neural progenitor	brain_primary	neuronal stem cell	in_vitro_differentiated_cells	embryonic		CL:0000047	encode	CL:0000047 polyA plus RNA-seq
Developmental brain / neural progenitor	brain_primary	neurosphere	primary_cell	embryonic		NTR:0000427	encode	NTR:0000427 polyA plus RNA-seq
Hippocampus	brain_primary	Ammon's horn	tissue	adult	Brain_Hippocampus	UBERON:0001954	gtex	UBERON:0001954 gtex Brain_Hippocampus polyA plus RNA-seq
In vitro non-neural	nonbrain_control	cardiac muscle cell	in_vitro_differentiated_cells	embryonic		CL:0000746	encode	CL:0000746 polyA plus RNA-seq
In vitro non-neural	nonbrain_control	cardiac muscle cell	in_vitro_differentiated_cells	embryonic		CL:0000746	encode	CL:0000746 total RNA-seq
In vitro non-neural	nonbrain_control	chondrocyte	in_vitro_differentiated_cells	embryonic		CL:0000138	encode	CL:0000138 total RNA-seq
In vitro non-neural	nonbrain_control	ectodermal cell	in_vitro_differentiated_cells	embryonic		CL:0000221	encode	CL:0000221 polyA plus RNA-seq
In vitro non-neural	nonbrain_control	endodermal cell	in_vitro_differentiated_cells	embryonic		CL:0000223	encode	CL:0000223 polyA plus RNA-seq
In vitro non-neural	nonbrain_control	endodermal cell	in_vitro_differentiated_cells	embryonic		CL:0000223	encode	CL:0000223 total RNA-seq
In vitro non-neural	nonbrain_control	endothelial cell	in_vitro_differentiated_cells	adult		CL:0000115	encode	CL:0000115 total RNA-seq
In vitro non-neural	nonbrain_control	hematopoietic multipotent progenitor cell	in_vitro_differentiated_cells	unknown		CL:0000837	encode	CL:0000837 total RNA-seq
In vitro non-neural	nonbrain_control	hepatocyte	in_vitro_differentiated_cells	embryonic		CL:0000182	encode	CL:0000182 polyA plus RNA-seq
In vitro non-neural	nonbrain_control	hepatocyte	in_vitro_differentiated_cells	embryonic		CL:0000182	encode	CL:0000182 total RNA-seq
In vitro non-neural	nonbrain_control	mesenchymal stem cell	in_vitro_differentiated_cells	embryonic		CL:0000134	encode	CL:0000134 polyA plus RNA-seq
In vitro non-neural	nonbrain_control	mesendoderm	in_vitro_differentiated_cells	embryonic		NTR:0000856	encode	NTR:0000856 polyA plus RNA-seq
In vitro non-neural	nonbrain_control	mesodermal cell	in_vitro_differentiated_cells	embryonic		CL:0000222	encode	CL:0000222 polyA plus RNA-seq
In vitro non-neural	nonbrain_control	mesothelial cell of epicardium	in_vitro_differentiated_cells	embryonic		CL:0011019	encode	CL:0011019 total RNA-seq
In vitro non-neural	nonbrain_control	myocyte	in_vitro_differentiated_cells	adult		CL:0000187	encode	CL:0000187 polyA plus RNA-seq
In vitro non-neural	nonbrain_control	myocyte	in_vitro_differentiated_cells	adult		CL:0000187	encode	CL:0000187 total RNA-seq
In vitro non-neural	nonbrain_control	myotube	in_vitro_differentiated_cells	unknown		CL:0002372	encode	CL:0002372 total RNA-seq
In vitro non-neural	nonbrain_control	osteocyte	in_vitro_differentiated_cells	embryonic		CL:0000137	encode	CL:0000137 total RNA-seq
In vitro non-neural	nonbrain_control	progenitor cell of endocrine pancreas	in_vitro_differentiated_cells	embryonic		CL:0002351	encode	CL:0002351 total RNA-seq
In vitro non-neural	nonbrain_control	smooth muscle cell	in_vitro_differentiated_cells	embryonic		CL:0000192	encode	CL:0000192 polyA plus RNA-seq
In vitro non-neural	nonbrain_control	smooth muscle cell	in_vitro_differentiated_cells	embryonic		CL:0000192	encode	CL:0000192 total RNA-seq
In vitro non-neural	nonbrain_control	trophoblast cell	in_vitro_differentiated_cells	embryonic		CL:0000351	encode	CL:0000351 polyA plus RNA-seq
In vitro non-neural	nonbrain_control	type B pancreatic cell	in_vitro_differentiated_cells	embryonic		CL:0000169	encode	CL:0000169 total RNA-seq
Neural / glial cells	brain_primary	glutamatergic neuron	in_vitro_differentiated_cells	adult		CL:0000679	encode	CL:0000679 total RNA-seq
Neural / glial cells	brain_primary	motor neuron	in_vitro_differentiated_cells	adult		CL:0000100	encode	CL:0000100 total RNA-seq
Neural / glial cells	brain_primary	neural cell	in_vitro_differentiated_cells	embryonic		CL:0002319	encode	CL:0002319 polyA plus RNA-seq
Neural / glial cells	brain_primary	neural crest cell	in_vitro_differentiated_cells	embryonic		CL:0011012	encode	CL:0011012 total RNA-seq
Neural / glial cells	brain_primary	Purkinje cell	primary_cell	child		CL:0000121	encode	CL:0000121 polyA plus RNA-seq
Neural / glial cells	brain_primary	astrocyte	primary_cell	unknown		CL:0000127	encode	CL:0000127 total RNA-seq
Non-brain cell line	nonbrain_control	A172	cell_line	adult		EFO:0002101	encode	EFO:0002101 total RNA-seq
Non-brain cell line	nonbrain_control	A375	cell_line	adult		EFO:0002103	encode	EFO:0002103 total RNA-seq
Non-brain cell line	nonbrain_control	A549	cell_line	adult		EFO:0001086	encode	EFO:0001086 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	A673	cell_line	child		EFO:0002106	encode	EFO:0002106 total RNA-seq
Non-brain cell line	nonbrain_control	AG04450	cell_line	embryonic		EFO:0006270	encode	EFO:0006270 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	BE2C	cell_line	child		EFO:0005725	encode	EFO:0005725 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	BJ	cell_line	newborn		EFO:0002779	encode	EFO:0002779 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	BLaER1	cell_line	unknown		EFO:0030018	encode	EFO:0030018 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	Caco-2	cell_line	adult		EFO:0001099	encode	EFO:0001099 total RNA-seq
Non-brain cell line	nonbrain_control	Caki2	cell_line	adult		EFO:0002150	encode	EFO:0002150 total RNA-seq
Non-brain cell line	nonbrain_control	Calu3	cell_line	adult		EFO:0002819	encode	EFO:0002819 total RNA-seq
Non-brain cell line	nonbrain_control	Daoy	cell_line	child		EFO:0005698	encode	EFO:0005698 total RNA-seq
Non-brain cell line	nonbrain_control	G401	cell_line	child		EFO:0002179	encode	EFO:0002179 total RNA-seq
Non-brain cell line	nonbrain_control	GM12878	cell_line	adult		EFO:0002784	encode	EFO:0002784 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	GM12878	cell_line	adult		EFO:0002784	encode	EFO:0002784 total RNA-seq
Non-brain cell line	nonbrain_control	GM12891	cell_line	unknown		EFO:0002785	encode	EFO:0002785 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	GM12892	cell_line	unknown		EFO:0002786	encode	EFO:0002786 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	GM23248	cell_line	adult		EFO:0005723	encode	EFO:0005723 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	GM23248	cell_line	adult		EFO:0005723	encode	EFO:0005723 total RNA-seq
Non-brain cell line	nonbrain_control	GM23338	cell_line	adult		EFO:0007950	encode	EFO:0007950 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	GM23338	cell_line	adult		EFO:0007950	encode	EFO:0007950 total RNA-seq
Non-brain cell line	nonbrain_control	H1	cell_line	embryonic		EFO:0003042	encode	EFO:0003042 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	H1	cell_line	embryonic		EFO:0003042	encode	EFO:0003042 total RNA-seq
Non-brain cell line	nonbrain_control	H4	cell_line	adult		EFO:0002184	encode	EFO:0002184 total RNA-seq
Non-brain cell line	nonbrain_control	H7	cell_line	embryonic		EFO:0005904	encode	EFO:0005904 total RNA-seq
Non-brain cell line	nonbrain_control	H9	cell_line	embryonic		EFO:0003045	encode	EFO:0003045 total RNA-seq
Non-brain cell line	nonbrain_control	HCT116	cell_line	adult		EFO:0002824	encode	EFO:0002824 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	HCT116	cell_line	adult		EFO:0002824	encode	EFO:0002824 total RNA-seq
Non-brain cell line	nonbrain_control	HFFc6	cell_line	newborn		EFO:0009318	encode	EFO:0009318 total RNA-seq
Non-brain cell line	nonbrain_control	HT-29	cell_line	adult		EFO:0001193	encode	EFO:0001193 total RNA-seq
Non-brain cell line	nonbrain_control	HT1080	cell_line	adult		EFO:0002059	encode	EFO:0002059 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	HT1080	cell_line	adult		EFO:0002059	encode	EFO:0002059 total RNA-seq
Non-brain cell line	nonbrain_control	HUES64	cell_line	embryonic		EFO:0007089	encode	EFO:0007089 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	HeLa-S3	cell_line	adult		EFO:0002791	encode	EFO:0002791 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	HepG2	cell_line	child		EFO:0001187	encode	EFO:0001187 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	HepG2	cell_line	child		EFO:0001187	encode	EFO:0001187 total RNA-seq
Non-brain cell line	nonbrain_control	IMR-90	cell_line	embryonic		EFO:0001196	encode	EFO:0001196 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	IMR-90	cell_line	embryonic		EFO:0001196	encode	EFO:0001196 total RNA-seq
Non-brain cell line	nonbrain_control	Jurkat, Clone E6-1	cell_line	child		CLO:0007045	encode	CLO:0007045 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	K562	cell_line	adult		EFO:0002067	encode	EFO:0002067 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	K562	cell_line	adult		EFO:0002067	encode	EFO:0002067 total RNA-seq
Non-brain cell line	nonbrain_control	Karpas-422	cell_line	adult		EFO:0005719	encode	EFO:0005719 total RNA-seq
Non-brain cell line	nonbrain_control	LHCN-M2	cell_line	adult		EFO:0005714	encode	EFO:0005714 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	LHCN-M2	cell_line	adult		EFO:0005714	encode	EFO:0005714 total RNA-seq
Non-brain cell line	nonbrain_control	M059J	cell_line	adult		EFO:0005697	encode	EFO:0005697 total RNA-seq
Non-brain cell line	nonbrain_control	MCF 10A	cell_line	adult		EFO:0001200	encode	EFO:0001200 total RNA-seq
Non-brain cell line	nonbrain_control	MCF-7	cell_line	adult		EFO:0001203	encode	EFO:0001203 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	MCF-7	cell_line	adult		EFO:0001203	encode	EFO:0001203 total RNA-seq
Non-brain cell line	nonbrain_control	MG63	cell_line	child		EFO:0002234	encode	EFO:0002234 total RNA-seq
Non-brain cell line	nonbrain_control	NCI-H460	cell_line	unknown		EFO:0003044	encode	EFO:0003044 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	NCI-H460	cell_line	unknown		EFO:0003044	encode	EFO:0003044 total RNA-seq
Non-brain cell line	nonbrain_control	OCI-LY7	cell_line	adult		EFO:0006711	encode	EFO:0006711 total RNA-seq
Non-brain cell line	nonbrain_control	PC-3	cell_line	adult		EFO:0002074	encode	EFO:0002074 total RNA-seq
Non-brain cell line	nonbrain_control	PC-9	cell_line	unknown		EFO:0002847	encode	EFO:0002847 total RNA-seq
Non-brain cell line	nonbrain_control	PFSK-1	cell_line	child		EFO:0005234	encode	EFO:0005234 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	Panc1	cell_line	adult		EFO:0002713	encode	EFO:0002713 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	Panc1	cell_line	adult		EFO:0002713	encode	EFO:0002713 total RNA-seq
Non-brain cell line	nonbrain_control	RPMI7951	cell_line	adult		EFO:0005712	encode	EFO:0005712 total RNA-seq
Non-brain cell line	nonbrain_control	SJCRH30	cell_line	child		EFO:0005722	encode	EFO:0005722 total RNA-seq
Non-brain cell line	nonbrain_control	SJSA1	cell_line	adult		EFO:0002330	encode	EFO:0002330 total RNA-seq
Non-brain cell line	nonbrain_control	SK-MEL-5	cell_line	adult		EFO:0005720	encode	EFO:0005720 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	SK-MEL-5	cell_line	adult		EFO:0005720	encode	EFO:0005720 total RNA-seq
Non-brain cell line	nonbrain_control	SK-N-DZ	cell_line	child		EFO:0005721	encode	EFO:0005721 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	SK-N-SH	cell_line	child		EFO:0003072	encode	EFO:0003072 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	U-87 MG	cell_line	adult		EFO:0005237	encode	EFO:0005237 polyA plus RNA-seq
Non-brain cell line	nonbrain_control	WTC11	cell_line	adult		EFO:0009747	encode	EFO:0009747 total RNA-seq
Non-brain tissue / other	nonbrain_control	Peyer's patch	tissue	adult	Small_Intestine_Terminal_Ileum	UBERON:0001211	gtex	UBERON:0001211 gtex Small_Intestine_Terminal_Ileum polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	Peyer's patch	tissue	adult		UBERON:0001211	encode	UBERON:0001211 total RNA-seq
Non-brain tissue / other	nonbrain_control	Right ventricle myocardium inferior	tissue	adult		NTR:0000491	encode	NTR:0000491 total RNA-seq
Non-brain tissue / other	nonbrain_control	Right ventricle myocardium superior	tissue	adult		NTR:0000492	encode	NTR:0000492 total RNA-seq
Non-brain tissue / other	nonbrain_control	adipose tissue	tissue	adult		UBERON:0001013	encode	UBERON:0001013 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	adrenal gland	tissue	adult	Adrenal_Gland	UBERON:0002369	gtex	UBERON:0002369 gtex Adrenal_Gland polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	adrenal gland	tissue	adult		UBERON:0002369	encode	UBERON:0002369 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	adrenal gland	tissue	adult		UBERON:0002369	encode	UBERON:0002369 total RNA-seq
Non-brain tissue / other	nonbrain_control	amnion	tissue	embryonic		UBERON:0000305	encode	UBERON:0000305 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	anterior lingual gland	tissue	adult	Minor_Salivary_Gland	UBERON:0006330	gtex	UBERON:0006330 gtex Minor_Salivary_Gland polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	aorta	tissue	adult		UBERON:0000947	encode	UBERON:0000947 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	aorta	tissue	adult		UBERON:0000947	encode	UBERON:0000947 total RNA-seq
Non-brain tissue / other	nonbrain_control	ascending aorta	tissue	adult	Artery_Aorta	UBERON:0001496	gtex	UBERON:0001496 gtex Artery_Aorta polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	ascending aorta	tissue	adult		UBERON:0001496	encode	UBERON:0001496 total RNA-seq
Non-brain tissue / other	nonbrain_control	body of pancreas	tissue	adult	Pancreas	UBERON:0001150	gtex	UBERON:0001150 gtex Pancreas polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	body of pancreas	tissue	adult		UBERON:0001150	encode	UBERON:0001150 total RNA-seq
Non-brain tissue / other	nonbrain_control	breast epithelium	tissue	adult	Breast_Mammary_Tissue	UBERON:0008367	gtex	UBERON:0008367 gtex Breast_Mammary_Tissue polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	breast epithelium	tissue	adult		UBERON:0008367	encode	UBERON:0008367 total RNA-seq
Non-brain tissue / other	nonbrain_control	camera-type eye	tissue	embryonic		UBERON:0000019	encode	UBERON:0000019 total RNA-seq
Non-brain tissue / other	nonbrain_control	cardiac septum	tissue	adult		UBERON:0002099	encode	UBERON:0002099 total RNA-seq
Non-brain tissue / other	nonbrain_control	chorion	tissue	embryonic		UBERON:0003124	encode	UBERON:0003124 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	chorionic villus	tissue	embryonic		UBERON:0007106	encode	UBERON:0007106 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	colonic mucosa	tissue	adult		UBERON:0000317	encode	UBERON:0000317 total RNA-seq
Non-brain tissue / other	nonbrain_control	coronary artery	tissue	adult	Artery_Coronary	UBERON:0001621	gtex	UBERON:0001621 gtex Artery_Coronary polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	cortex of kidney	tissue	adult	Kidney_Cortex	UBERON:0001225	gtex	UBERON:0001225 gtex Kidney_Cortex polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	ectocervix	tissue	adult	Cervix_Ectocervix	UBERON:0012249	gtex	UBERON:0012249 gtex Cervix_Ectocervix polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	endocervix	tissue	adult	Cervix_Endocervix	UBERON:0000458	gtex	UBERON:0000458 gtex Cervix_Endocervix polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	endocrine pancreas	tissue	adult		UBERON:0000016	encode	UBERON:0000016 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	esophagus	tissue	adult		UBERON:0001043	encode	UBERON:0001043 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	esophagus mucosa	tissue	adult		UBERON:0002469	encode	UBERON:0002469 total RNA-seq
Non-brain tissue / other	nonbrain_control	esophagus muscularis mucosa	tissue	adult	Esophagus_Muscularis	UBERON:0004648	gtex	UBERON:0004648 gtex Esophagus_Muscularis polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	esophagus muscularis mucosa	tissue	adult		UBERON:0004648	encode	UBERON:0004648 total RNA-seq
Non-brain tissue / other	nonbrain_control	esophagus squamous epithelium	tissue	adult	Esophagus_Mucosa	UBERON:0006920	gtex	UBERON:0006920 gtex Esophagus_Mucosa polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	esophagus squamous epithelium	tissue	adult		UBERON:0006920	encode	UBERON:0006920 total RNA-seq
Non-brain tissue / other	nonbrain_control	fallopian tube	tissue	adult	Fallopian_Tube	UBERON:0003889	gtex	UBERON:0003889 gtex Fallopian_Tube polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	fibroblast derived cell line	tissue	adult	Cells_Cultured_fibroblasts	EFO:0002009	gtex	EFO:0002009 gtex Cells_Cultured_fibroblasts polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	forelimb muscle	tissue	embryonic		UBERON:0003662	encode	UBERON:0003662 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	gastrocnemius medialis	tissue	adult	Muscle_Skeletal	UBERON:0011907	gtex	UBERON:0011907 gtex Muscle_Skeletal polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	gastrocnemius medialis	tissue	adult		UBERON:0011907	encode	UBERON:0011907 total RNA-seq
Non-brain tissue / other	nonbrain_control	gastroesophageal sphincter	tissue	adult	Esophagus_Gastroesophageal_Junction	UBERON:0004550	gtex	UBERON:0004550 gtex Esophagus_Gastroesophageal_Junction polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	gastroesophageal sphincter	tissue	adult		UBERON:0004550	encode	UBERON:0004550 total RNA-seq
Non-brain tissue / other	nonbrain_control	heart	tissue	adult		UBERON:0000948	encode	UBERON:0000948 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	heart	tissue	adult		UBERON:0000948	encode	UBERON:0000948 total RNA-seq
Non-brain tissue / other	nonbrain_control	heart left ventricle	tissue	adult		UBERON:0002084	encode	UBERON:0002084 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	heart left ventricle	tissue	adult		UBERON:0002084	encode	UBERON:0002084 total RNA-seq
Non-brain tissue / other	nonbrain_control	heart right ventricle	tissue	adult		UBERON:0002080	encode	UBERON:0002080 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	heart right ventricle	tissue	adult		UBERON:0002080	encode	UBERON:0002080 total RNA-seq
Non-brain tissue / other	nonbrain_control	hindlimb muscle	tissue	embryonic		UBERON:0003663	encode	UBERON:0003663 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	kidney	tissue	adult		UBERON:0002113	encode	UBERON:0002113 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	kidney	tissue	adult		UBERON:0002113	encode	UBERON:0002113 total RNA-seq
Non-brain tissue / other	nonbrain_control	large intestine	tissue	embryonic		UBERON:0000059	encode	UBERON:0000059 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	left cardiac atrium	tissue	adult		UBERON:0002079	encode	UBERON:0002079 total RNA-seq
Non-brain tissue / other	nonbrain_control	left colon	tissue	adult		UBERON:0008971	encode	UBERON:0008971 total RNA-seq
Non-brain tissue / other	nonbrain_control	left kidney	tissue	embryonic		UBERON:0004538	encode	UBERON:0004538 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	left lobe of liver	tissue	adult		UBERON:0001115	encode	UBERON:0001115 total RNA-seq
Non-brain tissue / other	nonbrain_control	left lung	tissue	embryonic		UBERON:0002168	encode	UBERON:0002168 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	left lung	tissue	adult		UBERON:0002168	encode	UBERON:0002168 total RNA-seq
Non-brain tissue / other	nonbrain_control	left renal cortex interstitium	tissue	embryonic		UBERON:0018117	encode	UBERON:0018117 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	left renal pelvis	tissue	embryonic		UBERON:0018115	encode	UBERON:0018115 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	left ventricle myocardium	tissue	adult	Heart_Left_Ventricle	UBERON:0006566	gtex	UBERON:0006566 gtex Heart_Left_Ventricle polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	left ventricle myocardium inferior	tissue	adult		NTR:0000493	encode	NTR:0000493 total RNA-seq
Non-brain tissue / other	nonbrain_control	left ventricle myocardium superior	tissue	adult		NTR:0000494	encode	NTR:0000494 total RNA-seq
Non-brain tissue / other	nonbrain_control	liver	tissue	child		UBERON:0002107	encode	UBERON:0002107 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	liver	tissue	embryonic		UBERON:0002107	encode	UBERON:0002107 total RNA-seq
Non-brain tissue / other	nonbrain_control	lower leg skin	tissue	adult	Skin_Sun_Exposed_Lower_leg	UBERON:0004264	gtex	UBERON:0004264 gtex Skin_Sun_Exposed_Lower_leg polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	lower leg skin	tissue	adult		UBERON:0004264	encode	UBERON:0004264 total RNA-seq
Non-brain tissue / other	nonbrain_control	lower lobe of left lung	tissue	adult		UBERON:0008953	encode	UBERON:0008953 total RNA-seq
Non-brain tissue / other	nonbrain_control	lower lobe of right lung	tissue	adult		UBERON:0002171	encode	UBERON:0002171 total RNA-seq
Non-brain tissue / other	nonbrain_control	lung	tissue	adult		UBERON:0002048	encode	UBERON:0002048 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	lung	tissue	embryonic		UBERON:0002048	encode	UBERON:0002048 total RNA-seq
Non-brain tissue / other	nonbrain_control	lymphoblast	tissue	adult	Cells_EBV-transformed_lymphocytes	EFO:0000572	gtex	EFO:0000572 gtex Cells_EBV-transformed_lymphocytes polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	mesenteric fat pad	tissue	adult		UBERON:0015143	encode	UBERON:0015143 total RNA-seq
Non-brain tissue / other	nonbrain_control	metanephros	tissue	embryonic		UBERON:0000081	encode	UBERON:0000081 total RNA-seq
Non-brain tissue / other	nonbrain_control	mole	tissue	unknown		UBERON:1000010	encode	UBERON:1000010 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	mucosa of descending colon	tissue	adult		UBERON:0004992	encode	UBERON:0004992 total RNA-seq
Non-brain tissue / other	nonbrain_control	mucosa of gallbladder	tissue	child		UBERON:0005033	encode	UBERON:0005033 total RNA-seq
Non-brain tissue / other	nonbrain_control	muscle of arm	tissue	embryonic		UBERON:0001499	encode	UBERON:0001499 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	muscle of back	tissue	embryonic		UBERON:0002324	encode	UBERON:0002324 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	muscle of leg	tissue	embryonic		UBERON:0001383	encode	UBERON:0001383 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	muscle of trunk	tissue	embryonic		UBERON:0001774	encode	UBERON:0001774 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	omental fat pad	tissue	adult	Adipose_Visceral_Omentum	UBERON:0010414	gtex	UBERON:0010414 gtex Adipose_Visceral_Omentum polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	omental fat pad	tissue	adult		UBERON:0010414	encode	UBERON:0010414 total RNA-seq
Non-brain tissue / other	nonbrain_control	outer medulla of kidney	tissue	adult	Kidney_Medulla	UBERON:0001293	gtex	UBERON:0001293 gtex Kidney_Medulla polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	ovary	tissue	adult	Ovary	UBERON:0000992	gtex	UBERON:0000992 gtex Ovary polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	ovary	tissue	adult		UBERON:0000992	encode	UBERON:0000992 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	ovary	tissue	adult		UBERON:0000992	encode	UBERON:0000992 total RNA-seq
Non-brain tissue / other	nonbrain_control	pancreas	tissue	adult		UBERON:0001264	encode	UBERON:0001264 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	pancreas	tissue	adult		UBERON:0001264	encode	UBERON:0001264 total RNA-seq
Non-brain tissue / other	nonbrain_control	pituitary gland	tissue	adult	Pituitary	UBERON:0000007	gtex	UBERON:0000007 gtex Pituitary polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	placenta	tissue	embryonic		UBERON:0001987	encode	UBERON:0001987 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	placenta	tissue	embryonic		UBERON:0001987	encode	UBERON:0001987 total RNA-seq
Non-brain tissue / other	nonbrain_control	placental basal plate	tissue	embryonic		NTR:0003013	encode	NTR:0003013 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	posterior vena cava	tissue	adult		UBERON:0001072	encode	UBERON:0001072 total RNA-seq
Non-brain tissue / other	nonbrain_control	prostate gland	tissue	adult	Prostate	UBERON:0002367	gtex	UBERON:0002367 gtex Prostate polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	prostate gland	tissue	adult		UBERON:0002367	encode	UBERON:0002367 total RNA-seq
Non-brain tissue / other	nonbrain_control	psoas muscle	tissue	adult		UBERON:0008450	encode	UBERON:0008450 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	psoas muscle	tissue	adult		UBERON:0008450	encode	UBERON:0008450 total RNA-seq
Non-brain tissue / other	nonbrain_control	renal cortex interstitium	tissue	embryonic		UBERON:0005270	encode	UBERON:0005270 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	renal pelvis	tissue	embryonic		UBERON:0001224	encode	UBERON:0001224 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	right atrium auricular region	tissue	adult	Heart_Atrial_Appendage	UBERON:0006631	gtex	UBERON:0006631 gtex Heart_Atrial_Appendage polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	right atrium auricular region	tissue	adult		UBERON:0006631	encode	UBERON:0006631 total RNA-seq
Non-brain tissue / other	nonbrain_control	right cardiac atrium	tissue	adult		UBERON:0002078	encode	UBERON:0002078 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	right cardiac atrium	tissue	adult		UBERON:0002078	encode	UBERON:0002078 total RNA-seq
Non-brain tissue / other	nonbrain_control	right lobe of liver	tissue	adult	Liver	UBERON:0001114	gtex	UBERON:0001114 gtex Liver polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	right lobe of liver	tissue	adult		UBERON:0001114	encode	UBERON:0001114 total RNA-seq
Non-brain tissue / other	nonbrain_control	right lung	tissue	embryonic		UBERON:0002167	encode	UBERON:0002167 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	right renal cortex interstitium	tissue	embryonic		UBERON:0018118	encode	UBERON:0018118 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	right renal pelvis	tissue	embryonic		UBERON:0018116	encode	UBERON:0018116 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	sciatic nerve	tissue	adult		UBERON:0001322	encode	UBERON:0001322 total RNA-seq
Non-brain tissue / other	nonbrain_control	sigmoid colon	tissue	adult	Colon_Sigmoid	UBERON:0001159	gtex	UBERON:0001159 gtex Colon_Sigmoid polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	sigmoid colon	tissue	adult		UBERON:0001159	encode	UBERON:0001159 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	sigmoid colon	tissue	adult		UBERON:0001159	encode	UBERON:0001159 total RNA-seq
Non-brain tissue / other	nonbrain_control	skeletal muscle tissue	tissue	embryonic		UBERON:0001134	encode	UBERON:0001134 total RNA-seq
Non-brain tissue / other	nonbrain_control	skin of body	tissue	embryonic		UBERON:0002097	encode	UBERON:0002097 total RNA-seq
Non-brain tissue / other	nonbrain_control	small intestine	tissue	adult		UBERON:0002108	encode	UBERON:0002108 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	spleen	tissue	adult	Spleen	UBERON:0002106	gtex	UBERON:0002106 gtex Spleen polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	spleen	tissue	adult		UBERON:0002106	encode	UBERON:0002106 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	spleen	tissue	adult		UBERON:0002106	encode	UBERON:0002106 total RNA-seq
Non-brain tissue / other	nonbrain_control	stomach	tissue	adult	Stomach	UBERON:0000945	gtex	UBERON:0000945 gtex Stomach polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	stomach	tissue	adult		UBERON:0000945	encode	UBERON:0000945 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	stomach	tissue	adult		UBERON:0000945	encode	UBERON:0000945 total RNA-seq
Non-brain tissue / other	nonbrain_control	subcutaneous adipose tissue	tissue	adult	Adipose_Subcutaneous	UBERON:0002190	gtex	UBERON:0002190 gtex Adipose_Subcutaneous polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	subcutaneous adipose tissue	tissue	adult		UBERON:0002190	encode	UBERON:0002190 total RNA-seq
Non-brain tissue / other	nonbrain_control	suprapubic skin	tissue	adult	Skin_Not_Sun_Exposed_Suprapubic	UBERON:0036149	gtex	UBERON:0036149 gtex Skin_Not_Sun_Exposed_Suprapubic polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	suprapubic skin	tissue	adult		UBERON:0036149	encode	UBERON:0036149 total RNA-seq
Non-brain tissue / other	nonbrain_control	testis	tissue	adult	Testis	UBERON:0000473	gtex	UBERON:0000473 gtex Testis polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	testis	tissue	adult		UBERON:0000473	encode	UBERON:0000473 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	testis	tissue	adult		UBERON:0000473	encode	UBERON:0000473 total RNA-seq
Non-brain tissue / other	nonbrain_control	thoracic aorta	tissue	adult		UBERON:0001515	encode	UBERON:0001515 total RNA-seq
Non-brain tissue / other	nonbrain_control	thymus	tissue	embryonic		UBERON:0002370	encode	UBERON:0002370 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	thyroid gland	tissue	adult	Thyroid	UBERON:0002046	gtex	UBERON:0002046 gtex Thyroid polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	thyroid gland	tissue	adult		UBERON:0002046	encode	UBERON:0002046 total RNA-seq
Non-brain tissue / other	nonbrain_control	tibial artery	tissue	adult	Artery_Tibial	UBERON:0007610	gtex	UBERON:0007610 gtex Artery_Tibial polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	tibial nerve	tissue	adult	Nerve_Tibial	UBERON:0001323	gtex	UBERON:0001323 gtex Nerve_Tibial polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	tibial nerve	tissue	adult		UBERON:0001323	encode	UBERON:0001323 total RNA-seq
Non-brain tissue / other	nonbrain_control	tongue	tissue	embryonic		UBERON:0001723	encode	UBERON:0001723 total RNA-seq
Non-brain tissue / other	nonbrain_control	transverse colon	tissue	adult	Colon_Transverse	UBERON:0001157	gtex	UBERON:0001157 gtex Colon_Transverse polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	transverse colon	tissue	adult		UBERON:0001157	encode	UBERON:0001157 total RNA-seq
Non-brain tissue / other	nonbrain_control	trophoblast	tissue	embryonic		UBERON:0000088	encode	UBERON:0000088 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	umbilical cord	tissue	embryonic		UBERON:0002331	encode	UBERON:0002331 total RNA-seq
Non-brain tissue / other	nonbrain_control	upper lobe of left lung	tissue	adult	Lung	UBERON:0008952	gtex	UBERON:0008952 gtex Lung polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	upper lobe of left lung	tissue	adult		UBERON:0008952	encode	UBERON:0008952 total RNA-seq
Non-brain tissue / other	nonbrain_control	upper lobe of right lung	tissue	adult		UBERON:0002170	encode	UBERON:0002170 total RNA-seq
Non-brain tissue / other	nonbrain_control	ureter	tissue	adult		UBERON:0000056	encode	UBERON:0000056 total RNA-seq
Non-brain tissue / other	nonbrain_control	urinary bladder	tissue	adult	Bladder	UBERON:0001255	gtex	UBERON:0001255 gtex Bladder polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	urinary bladder	tissue	child		UBERON:0001255	encode	UBERON:0001255 polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	urinary bladder	tissue	embryonic		UBERON:0001255	encode	UBERON:0001255 total RNA-seq
Non-brain tissue / other	nonbrain_control	uterus	tissue	adult	Uterus	UBERON:0000995	gtex	UBERON:0000995 gtex Uterus polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	uterus	tissue	adult		UBERON:0000995	encode	UBERON:0000995 total RNA-seq
Non-brain tissue / other	nonbrain_control	vagina	tissue	adult	Vagina	UBERON:0000996	gtex	UBERON:0000996 gtex Vagina polyA plus RNA-seq
Non-brain tissue / other	nonbrain_control	vagina	tissue	adult		UBERON:0000996	encode	UBERON:0000996 total RNA-seq
Non-brain tissue / other	nonbrain_control	venous blood	tissue	adult	Whole_Blood	UBERON:0013756	gtex	UBERON:0013756 gtex Whole_Blood polyA plus RNA-seq
Other brain	brain_primary	C1 segment of cervical spinal cord	tissue	adult	Brain_Spinal_cord_cervical_c-1	UBERON:0006469	gtex	UBERON:0006469 gtex Brain_Spinal_cord_cervical_c-1 polyA plus RNA-seq
Other brain	brain_primary	amygdala	tissue	adult	Brain_Amygdala	UBERON:0001876	gtex	UBERON:0001876 gtex Brain_Amygdala polyA plus RNA-seq
Other brain	brain_primary	diencephalon	tissue	embryonic		UBERON:0001894	encode	UBERON:0001894 total RNA-seq
Other brain	brain_primary	hypothalamus	tissue	adult	Brain_Hypothalamus	UBERON:0001898	gtex	UBERON:0001898 gtex Brain_Hypothalamus polyA plus RNA-seq
Other brain	brain_primary	occipital lobe	tissue	embryonic		UBERON:0002021	encode	UBERON:0002021 total RNA-seq
Other brain	brain_primary	parietal lobe	tissue	embryonic		UBERON:0001872	encode	UBERON:0001872 total RNA-seq
Other brain	brain_primary	spinal cord	tissue	embryonic		UBERON:0002240	encode	UBERON:0002240 polyA plus RNA-seq
Other brain	brain_primary	spinal cord	tissue	embryonic		UBERON:0002240	encode	UBERON:0002240 total RNA-seq
Other brain	brain_primary	substantia nigra	tissue	adult	Brain_Substantia_nigra	UBERON:0002038	gtex	UBERON:0002038 gtex Brain_Substantia_nigra polyA plus RNA-seq
Other brain	brain_primary	temporal lobe	tissue	embryonic		UBERON:0001871	encode	UBERON:0001871 total RNA-seq
Primary non-brain cell	nonbrain_control	B cell	primary_cell	adult		CL:0000236	encode	CL:0000236 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	B cell	primary_cell	adult		CL:0000236	encode	CL:0000236 total RNA-seq
Primary non-brain cell	nonbrain_control	CD14-positive monocyte	primary_cell	adult		CL:0001054	encode	CL:0001054 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	CD4-positive, CD25-positive, alpha-beta regulatory T cell	primary_cell	unknown		CL:0000792	encode	CL:0000792 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	CD4-positive, CD25-positive, alpha-beta regulatory T cell	primary_cell	adult		CL:0000792	encode	CL:0000792 total RNA-seq
Primary non-brain cell	nonbrain_control	CD4-positive, alpha-beta T cell	primary_cell	adult		CL:0000624	encode	CL:0000624 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	CD4-positive, alpha-beta T cell	primary_cell	adult		CL:0000624	encode	CL:0000624 total RNA-seq
Primary non-brain cell	nonbrain_control	CD4-positive, alpha-beta memory T cell	primary_cell	unknown		CL:0000897	encode	CL:0000897 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	CD4-positive, alpha-beta memory T cell	primary_cell	adult		CL:0000897	encode	CL:0000897 total RNA-seq
Primary non-brain cell	nonbrain_control	CD8-positive, alpha-beta T cell	primary_cell	adult		CL:0000625	encode	CL:0000625 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	CD8-positive, alpha-beta T cell	primary_cell	adult		CL:0000625	encode	CL:0000625 total RNA-seq
Primary non-brain cell	nonbrain_control	CD8-positive, alpha-beta memory T cell	primary_cell	unknown		CL:0000909	encode	CL:0000909 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	CD8-positive, alpha-beta memory T cell	primary_cell	adult		CL:0000909	encode	CL:0000909 total RNA-seq
Primary non-brain cell	nonbrain_control	IgD-negative memory B cell	primary_cell	unknown		CL:0001053	encode	CL:0001053 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	T-cell	primary_cell	adult		CL:0000084	encode	CL:0000084 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	T-cell	primary_cell	adult		CL:0000084	encode	CL:0000084 total RNA-seq
Primary non-brain cell	nonbrain_control	T-helper 17 cell	primary_cell	adult		CL:0000899	encode	CL:0000899 total RNA-seq
Primary non-brain cell	nonbrain_control	airway epithelial cell	primary_cell	unknown		CL:0002368	encode	CL:0002368 total RNA-seq
Primary non-brain cell	nonbrain_control	aortic smooth muscle cell	primary_cell	adult		CL:0002539	encode	CL:0002539 total RNA-seq
Primary non-brain cell	nonbrain_control	articular chondrocyte of knee joint	primary_cell	adult		CL:2000007	encode	CL:2000007 total RNA-seq
Primary non-brain cell	nonbrain_control	bladder microvascular endothelial cell	primary_cell	adult		CL:2000040	encode	CL:2000040 total RNA-seq
Primary non-brain cell	nonbrain_control	bronchial epithelial cell	primary_cell	adult		CL:0002328	encode	CL:0002328 total RNA-seq
Primary non-brain cell	nonbrain_control	bronchial smooth muscle cell	primary_cell	adult		CL:0002598	encode	CL:0002598 total RNA-seq
Primary non-brain cell	nonbrain_control	bronchus fibroblast of lung	primary_cell	unknown		CL:2000093	encode	CL:2000093 total RNA-seq
Primary non-brain cell	nonbrain_control	cardiac atrium fibroblast	primary_cell	child		CL:2000067	encode	CL:2000067 total RNA-seq
Primary non-brain cell	nonbrain_control	cardiac ventricle fibroblast	primary_cell	adult,unknown		CL:2000066	encode	CL:2000066 total RNA-seq
Primary non-brain cell	nonbrain_control	common myeloid progenitor, CD34-positive	primary_cell	adult		CL:0001059	encode	CL:0001059 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	dermis blood vessel endothelial cell	primary_cell	child		CL:2000010	encode	CL:2000010 total RNA-seq
Primary non-brain cell	nonbrain_control	dermis lymphatic vessel endothelial cell	primary_cell	child,adult		CL:2000011	encode	CL:2000011 total RNA-seq
Primary non-brain cell	nonbrain_control	dermis microvascular lymphatic vessel endothelial cell	primary_cell	adult		CL:2000041	encode	CL:2000041 total RNA-seq
Primary non-brain cell	nonbrain_control	endothelial cell of coronary artery	primary_cell	adult		CL:2000018	encode	CL:2000018 total RNA-seq
Primary non-brain cell	nonbrain_control	endothelial cell of umbilical vein	primary_cell	newborn		CL:0002618	encode	CL:0002618 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	endothelial cell of umbilical vein	primary_cell	newborn		CL:0002618	encode	CL:0002618 total RNA-seq
Primary non-brain cell	nonbrain_control	epithelial cell of alveolus of lung	primary_cell	unknown,embryonic		CL:0010003	encode	CL:0010003 total RNA-seq
Primary non-brain cell	nonbrain_control	epithelial cell of proximal tubule	primary_cell	unknown		CL:0002306	encode	CL:0002306 total RNA-seq
Primary non-brain cell	nonbrain_control	epithelial cell of umbilical artery	primary_cell	newborn		CL:0010002	encode	CL:0010002 total RNA-seq
Primary non-brain cell	nonbrain_control	fibroblast of dermis	primary_cell	adult		CL:0002551	encode	CL:0002551 total RNA-seq
Primary non-brain cell	nonbrain_control	fibroblast of lung	primary_cell	adult		CL:0002553	encode	CL:0002553 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	fibroblast of lung	primary_cell	adult		CL:0002553	encode	CL:0002553 total RNA-seq
Primary non-brain cell	nonbrain_control	fibroblast of skin of abdomen	primary_cell	embryonic		CL:2000013	encode	CL:2000013 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	fibroblast of skin of back	primary_cell	embryonic		CL:0011022	encode	CL:0011022 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	fibroblast of skin of scalp	primary_cell	embryonic		NTR:0000524	encode	NTR:0000524 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	fibroblast of the aortic adventitia	primary_cell	adult		CL:0002547	encode	CL:0002547 total RNA-seq
Primary non-brain cell	nonbrain_control	fibroblast of villous mesenchyme	primary_cell	newborn		CL:0002558	encode	CL:0002558 total RNA-seq
Primary non-brain cell	nonbrain_control	foreskin fibroblast	primary_cell	newborn		CL:1001608	encode	CL:1001608 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	foreskin keratinocyte	primary_cell	newborn		CL:1001606	encode	CL:1001606 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	foreskin keratinocyte	primary_cell	newborn		CL:1001606	encode	CL:1001606 total RNA-seq
Primary non-brain cell	nonbrain_control	foreskin melanocyte	primary_cell	newborn		CL:2000045	encode	CL:2000045 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	glomerular endothelial cell	primary_cell	embryonic		CL:0002188	encode	CL:0002188 total RNA-seq
Primary non-brain cell	nonbrain_control	hair follicle dermal papilla cell	primary_cell	adult		CL:0000346	encode	CL:0000346 total RNA-seq
Primary non-brain cell	nonbrain_control	hair follicular keratinocyte	primary_cell	adult		CL:2000092	encode	CL:2000092 total RNA-seq
Primary non-brain cell	nonbrain_control	immature natural killer cell	primary_cell	unknown		CL:0000823	encode	CL:0000823 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	keratinocyte	primary_cell	unknown		CL:0000312	encode	CL:0000312 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	kidney epithelial cell	primary_cell	embryonic,newborn		CL:0002518	encode	CL:0002518 total RNA-seq
Primary non-brain cell	nonbrain_control	luminal epithelial cell of mammary gland	primary_cell	adult		CL:0002326	encode	CL:0002326 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	lung microvascular endothelial cell	primary_cell	adult		CL:2000016	encode	CL:2000016 total RNA-seq
Primary non-brain cell	nonbrain_control	mammary epithelial cell	primary_cell	adult		CL:0002327	encode	CL:0002327 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	mammary epithelial cell	primary_cell	adult		CL:0002327	encode	CL:0002327 total RNA-seq
Primary non-brain cell	nonbrain_control	mammary microvascular endothelial cell	primary_cell	adult		CL:2000071	encode	CL:2000071 total RNA-seq
Primary non-brain cell	nonbrain_control	mammary stem cell	primary_cell	adult		CL:0002451	encode	CL:0002451 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	melanocyte of skin	primary_cell	adult		CL:1000458	encode	CL:1000458 total RNA-seq
Primary non-brain cell	nonbrain_control	mesangial cell	primary_cell	unknown,embryonic		CL:0000650	encode	CL:0000650 total RNA-seq
Primary non-brain cell	nonbrain_control	mesenchymal stem cell of Wharton's jelly	primary_cell	newborn		CL:0002568	encode	CL:0002568 total RNA-seq
Primary non-brain cell	nonbrain_control	mesenchymal stem cell of adipose	primary_cell	adult		CL:0002570	encode	CL:0002570 total RNA-seq
Primary non-brain cell	nonbrain_control	mesenchymal stem cell of the bone marrow	primary_cell	adult		CL:0002540	encode	CL:0002540 total RNA-seq
Primary non-brain cell	nonbrain_control	mononuclear cell	primary_cell	adult		CL:0000842	encode	CL:0000842 total RNA-seq
Primary non-brain cell	nonbrain_control	myoepithelial cell of mammary gland	primary_cell	adult		CL:0002324	encode	CL:0002324 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	myometrial cell	primary_cell	adult		CL:0002366	encode	CL:0002366 total RNA-seq
Primary non-brain cell	nonbrain_control	naive B cell	primary_cell	unknown		CL:0000788	encode	CL:0000788 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	naive thymus-derived CD4-positive, alpha-beta T cell	primary_cell	unknown		CL:0000895	encode	CL:0000895 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	naive thymus-derived CD4-positive, alpha-beta T cell	primary_cell	adult		CL:0000895	encode	CL:0000895 total RNA-seq
Primary non-brain cell	nonbrain_control	naive thymus-derived CD8-positive, alpha-beta T cell	primary_cell	unknown		CL:0000900	encode	CL:0000900 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	naive thymus-derived CD8-positive, alpha-beta T cell	primary_cell	adult		CL:0000900	encode	CL:0000900 total RNA-seq
Primary non-brain cell	nonbrain_control	nasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa	primary_cell	adult		CL:2000094	encode	CL:2000094 total RNA-seq
Primary non-brain cell	nonbrain_control	natural killer cell	primary_cell	adult		CL:0000623	encode	CL:0000623 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	natural killer cell	primary_cell	adult		CL:0000623	encode	CL:0000623 total RNA-seq
Primary non-brain cell	nonbrain_control	osteoblast	primary_cell	adult		CL:0000062	encode	CL:0000062 total RNA-seq
Primary non-brain cell	nonbrain_control	pericardium fibroblast	primary_cell	embryonic,unknown		CL:2000068	encode	CL:2000068 total RNA-seq
Primary non-brain cell	nonbrain_control	peripheral blood mononuclear cell	primary_cell	adult		CL:2000001	encode	CL:2000001 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	placental epithelial cell	primary_cell	newborn		CL:0002577	encode	CL:0002577 total RNA-seq
Primary non-brain cell	nonbrain_control	placental pericyte	primary_cell	newborn		CL:2000078	encode	CL:2000078 total RNA-seq
Primary non-brain cell	nonbrain_control	pulmonary artery endothelial cell	primary_cell	adult		CL:1001568	encode	CL:1001568 total RNA-seq
Primary non-brain cell	nonbrain_control	regular cardiac myocyte	primary_cell	adult		CL:0002098	encode	CL:0002098 total RNA-seq
Primary non-brain cell	nonbrain_control	renal cortical epithelial cell	primary_cell	adult		CL:0002584	encode	CL:0002584 total RNA-seq
Primary non-brain cell	nonbrain_control	skeletal muscle myoblast	primary_cell	unknown		CL:0000515	encode	CL:0000515 polyA plus RNA-seq
Primary non-brain cell	nonbrain_control	skeletal muscle myoblast	primary_cell	unknown		CL:0000515	encode	CL:0000515 total RNA-seq
Primary non-brain cell	nonbrain_control	skeletal muscle satellite cell	primary_cell	adult		CL:0000594	encode	CL:0000594 total RNA-seq
Primary non-brain cell	nonbrain_control	smooth muscle cell of bladder	primary_cell	adult		CL:0002597	encode	CL:0002597 total RNA-seq
Primary non-brain cell	nonbrain_control	smooth muscle cell of the coronary artery	primary_cell	adult		CL:0002592	encode	CL:0002592 total RNA-seq
Primary non-brain cell	nonbrain_control	smooth muscle cell of the pulmonary artery	primary_cell	adult		CL:0002591	encode	CL:0002591 total RNA-seq
Primary non-brain cell	nonbrain_control	smooth muscle cell of the umbilical artery	primary_cell	newborn		CL:0002594	encode	CL:0002594 total RNA-seq
Primary non-brain cell	nonbrain_control	smooth muscle cell of trachea	primary_cell	adult		CL:0002600	encode	CL:0002600 total RNA-seq
Primary non-brain cell	nonbrain_control	subcutaneous preadipocyte	primary_cell	adult		CL:0002583	encode	CL:0002583 total RNA-seq
Primary non-brain cell	nonbrain_control	thoracic aorta endothelial cell	primary_cell	adult		CL:0002545	encode	CL:0002545 total RNA-seq
Primary non-brain cell	nonbrain_control	tracheal epithelial cell	primary_cell	adult		CL:0000307	encode	CL:0000307 total RNA-seq
Primary non-brain cell	nonbrain_control	uterine smooth muscle cell	primary_cell	adult		CL:0002601	encode	CL:0002601 total RNA-seq
Primary non-brain cell	nonbrain_control	vein endothelial cell	primary_cell	adult		CL:0002543	encode	CL:0002543 total RNA-seq
Whole brain	brain_primary	brain	tissue	adult		UBERON:0000955	encode	UBERON:0000955 polyA plus RNA-seq